Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site
comparison 02_fastqc_original_reports.Rmd @ 7:d820be692d74 draft
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit d91f269e8bc09a488ed2e005122bbb4a521f44a0-dirty
| author | mingchen0919 |
|---|---|
| date | Tue, 08 Aug 2017 12:36:13 -0400 |
| parents | d732d4526c6d |
| children |
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| 6:2f4df2be0572 | 7:d820be692d74 |
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| 1 --- | |
| 2 title: "FastQC original reports" | |
| 3 output: html_document | |
| 4 --- | |
| 5 | |
| 6 ```{r 'FastQC original reports', include=FALSE, warning=FALSE, message=FALSE} | |
| 7 knitr::opts_chunk$set(echo = ECHO) | |
| 8 ``` | |
| 9 | |
| 10 | |
| 11 Below are links to ***Fastqc*** original html reports. | |
| 12 | |
| 13 ```{r 'html report links'} | |
| 14 html_report_list = list() | |
| 15 html_files = list.files('REPORT_OUTPUT_DIR', pattern = '.*html') | |
| 16 for (i in html_files) { | |
| 17 html_report_list[[i]] = tags$li(tags$a(href=i, i)) | |
| 18 } | |
| 19 tags$ul(html_report_list) | |
| 20 ``` |