Mercurial > repos > mingchen0919 > rmarkdown_fastqc_site

diff 02_fastqc_original_reports.Rmd @ 7:d820be692d74 draft

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planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_site commit d91f269e8bc09a488ed2e005122bbb4a521f44a0-dirty
author mingchen0919
date Tue, 08 Aug 2017 12:36:13 -0400
parents d732d4526c6d
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/02_fastqc_original_reports.Rmd	Tue Aug 08 12:36:13 2017 -0400
@@ -0,0 +1,20 @@
+---
+title: "FastQC original reports"
+output: html_document
+---
+
+```{r 'FastQC original reports', include=FALSE, warning=FALSE, message=FALSE}
+knitr::opts_chunk$set(echo = ECHO)
+```
+
+
+Below are links to ***Fastqc*** original html reports.
+
+```{r 'html report links'}
+html_report_list = list()
+html_files = list.files('REPORT_OUTPUT_DIR', pattern = '.*html')
+for (i in html_files) {
+  html_report_list[[i]] = tags$li(tags$a(href=i, i))
+}
+tags$ul(html_report_list)
+```
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