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22
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1 <macros>
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2 <macro name="outputs">
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3 <outputs>
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4 <data format="vcf" name="output1_vcf" label="${tool.name} on ${on_string}(passed.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.snvs.vcf">
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5 <filter>output1_file_check == True</filter>
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6 </data>
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7 <data format="vcf" name="output2_vcf" label="${tool.name} on ${on_string}(passed.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.indels.vcf">
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8 <filter>output2_file_check == True</filter>
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9 </data>
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10 <data format="vcf" name="output3_vcf" label="${tool.name} on ${on_string}(all.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.snvs.vcf">
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11 <filter>output3_file_check == True</filter>
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12 </data>
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13 <data format="vcf" name="output4_vcf" label="${tool.name} on ${on_string}(all.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.indels.vcf">
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14 <filter>output4_file_check == True</filter>
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15 </data>
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16 <data format="tabular" name="conf_file.ini" label="conf_file.ini" from_work_dir="StrelkaAnalysis/config.ini">
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17 <filter>conf_file_check == True</filter>
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18 </data>
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19 <data format="bam" name="output5_bam" label="${tool.name} on ${on_string}(normal.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/normal.realigned.bam">
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20 <filter>output5_file_check == True</filter>
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21 </data>
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22 <data format="bam" name="output6_bam" label="${tool.name} on ${on_string}(tumor.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/tumor.realigned.bam">
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23 <filter>output6_file_check == True</filter>
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24 </data>
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25 </outputs>
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26 </macro>
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27 </macros>
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