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comparison macro_outputs.xml @ 22:1c8dcda28be7

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version 27/11/2014, corrected extra arguments bug
author mini
date Thu, 27 Nov 2014 10:31:58 +0100
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21:f785839fb395 22:1c8dcda28be7
1 <macros>
2 <macro name="outputs">
3 <outputs>
4 <data format="vcf" name="output1_vcf" label="${tool.name} on ${on_string}(passed.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.snvs.vcf">
5 <filter>output1_file_check == True</filter>
6 </data>
7 <data format="vcf" name="output2_vcf" label="${tool.name} on ${on_string}(passed.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/passed.somatic.indels.vcf">
8 <filter>output2_file_check == True</filter>
9 </data>
10 <data format="vcf" name="output3_vcf" label="${tool.name} on ${on_string}(all.somatic.snvs.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.snvs.vcf">
11 <filter>output3_file_check == True</filter>
12 </data>
13 <data format="vcf" name="output4_vcf" label="${tool.name} on ${on_string}(all.somatic.indels.vcf)" from_work_dir="StrelkaAnalysis/results/all.somatic.indels.vcf">
14 <filter>output4_file_check == True</filter>
15 </data>
16 <data format="tabular" name="conf_file.ini" label="conf_file.ini" from_work_dir="StrelkaAnalysis/config.ini">
17 <filter>conf_file_check == True</filter>
18 </data>
19 <data format="bam" name="output5_bam" label="${tool.name} on ${on_string}(normal.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/normal.realigned.bam">
20 <filter>output5_file_check == True</filter>
21 </data>
22 <data format="bam" name="output6_bam" label="${tool.name} on ${on_string}(tumor.realigned.bam)" from_work_dir="StrelkaAnalysis/realigned/tumor.realigned.bam">
23 <filter>output6_file_check == True</filter>
24 </data>
25 </outputs>
26 </macro>
27 </macros>