changeset 9:a3024f51082d draft

planemo upload commit 239d7043ccba9d1d1861d7d8ac353c77497e0880
author lecorguille
date Wed, 29 Nov 2017 10:03:55 -0500
parents 198b035d4848
children 479a83f62863
files README.rst abims_CAMERA_combinexsAnnos.xml macros.xml
diffstat 3 files changed, 13 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Fri Apr 07 07:42:38 2017 -0400
+++ b/README.rst	Wed Nov 29 10:03:55 2017 -0500
@@ -2,6 +2,11 @@
 Changelog/News
 --------------
 
+**Version 2.0.7 - 29/11/2017**
+
+- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
+
+
 **Version 2.0.6 - 10/02/2017**
 
 - IMPROVEMENT: Synchronize the variableMetadata export option with the other tools (xcms.group, xcms.fillpeaks, camera.annotate)
@@ -33,7 +38,7 @@
 
 **Version 2.0.0 - 09/06/2015**
 
-- NEW: combinexsAnnos Check CAMERA ion species annotation due to matching with opposite ion mode 
+- NEW: combinexsAnnos Check CAMERA ion species annotation due to matching with opposite ion mode
 
 
 Test Status
--- a/abims_CAMERA_combinexsAnnos.xml	Fri Apr 07 07:42:38 2017 -0400
+++ b/abims_CAMERA_combinexsAnnos.xml	Wed Nov 29 10:03:55 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="abims_CAMERA_combinexsAnnos" name="CAMERA.combinexsAnnos" version="2.0.6">
+<tool id="abims_CAMERA_combinexsAnnos" name="CAMERA.combinexsAnnos" version="2.0.7">
 
     <description>Wrapper function for the combinexsAnnos CAMERA function. Returns a dataframe with recalculated annotations.</description>
 
@@ -209,6 +209,11 @@
 Changelog/News
 --------------
 
+**Version 2.0.7 - 29/11/2017**
+
+- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
+
+
 **Version 2.0.6 - 10/02/2017**
 
 - IMPROVEMENT: Synchronize the variableMetadata export option with the other tools (xcms.group, xcms.fillpeaks, camera.annotate)
--- a/macros.xml	Fri Apr 07 07:42:38 2017 -0400
+++ b/macros.xml	Wed Nov 29 10:03:55 2017 -0500
@@ -16,7 +16,7 @@
     </xml>
 
     <token name="@COMMAND_CAMERA_SCRIPT@">
-        LANG=C Rscript $__tool_directory__/CAMERA.r
+        LC_ALL=C Rscript $__tool_directory__/CAMERA.r
     </token>
 
     <!-- raw file load for planemo test -->