Mercurial > repos > mnhn65mo > regionalgam
diff autocorr-res_acf_en.xml @ 0:5b126f770671 draft
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author | mnhn65mo |
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date | Fri, 03 Aug 2018 08:28:22 -0400 |
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children | b8fa05dbcff4 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/autocorr-res_acf_en.xml Fri Aug 03 08:28:22 2018 -0400 @@ -0,0 +1,39 @@ +<tool id="autocor-acf" name="Autocorrelation test" version="0.1"> + <description>check for temporal autocorrelation in the residuals</description> + <requirements> + <requirement type="package" version="3.1_131">r-nlme</requirement> + <requirement type="package" version="7.3_48">r-mass</requirement> + <requirement type="package" version="0.9.10">xorg-libxrender</requirement> + <requirement type="package" version="1.1.2">xorg-libsm</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + Rscript '$__tool_directory__/autocorr-res_acf.R' '$input1' '$output' ]]> + </command> + <inputs> + <param format="rdata" name="input1" type="data" label="gls model" help="Rdata file"/> + </inputs> + <outputs> + <data format="png" name="output" from_work_dir="output-acf.png" /> + </outputs> + <tests> + <test> + <param name="input1" value="mod1"/> + <param output="output" value="res.png"/> + </test> + </tests> + + <help><![CDATA[ + +.. class:: infomark + +========================== +Model residuals autocorrelation check +========================== + +This tool is an implementation of the autocorr-res_acf function from `RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ +This function uses a simple linear model and explore for temporal autocorrelation that we will account in the final model. + ]]></help> + <citations> + <citation type="doi">10.1111/1365-2664.12561</citation> +</citations> +</tool>