|
5
|
1 <macros>
|
|
|
2
|
|
|
3 <token name="@VERSION@">1.0</token>
|
|
|
4 <xml name="requirements">
|
|
|
5 <requirements>
|
|
|
6 <requirement type="package" version="0.0.26">epic2</requirement>
|
|
|
7 <requirement type="package">htslib</requirement>
|
|
|
8 </requirements>
|
|
|
9 </xml>
|
|
|
10
|
|
|
11 <xml name="effectiveGenomeSize">
|
|
|
12 <param name="builtin_genome" argument="--genome" type="select" label="Genome" help="Default hg19 (--genome)" >
|
|
|
13 <option value="ailMel1">ailMel1</option>
|
|
|
14 <option value="anoCar2">anoCar2</option>
|
|
|
15 <option value="apiMel1">apiMel1</option>
|
|
|
16 <option value="aplCal1">aplCal1</option>
|
|
|
17 <option value="aquChr2">aquChr2</option>
|
|
|
18 <option value="balAcu1">balAcu1</option>
|
|
|
19 <option value="braFlo1">braFlo1</option>
|
|
|
20 <option value="calJac1">calJac1</option>
|
|
|
21 <option value="calJac3">calJac3</option>
|
|
|
22 <option value="cavPor3">cavPor3</option>
|
|
|
23 <option value="ce10">ce10</option>
|
|
|
24 <option value="ce11">ce11</option>
|
|
|
25 <option value="cerSim1">cerSim1</option>
|
|
|
26 <option value="chlSab2">chlSab2</option>
|
|
|
27 <option value="chrPic1">chrPic1</option>
|
|
|
28 <option value="danRer10">danRer10</option>
|
|
|
29 <option value="danRer3">danRer3</option>
|
|
|
30 <option value="danRer4">danRer4</option>
|
|
|
31 <option value="danRer5">danRer5</option>
|
|
|
32 <option value="danRer6">danRer6</option>
|
|
|
33 <option value="danRer7">danRer7</option>
|
|
|
34 <option value="dm3">dm3</option>
|
|
|
35 <option value="dm6">dm6</option>
|
|
|
36 <option value="echTel2">echTel2</option>
|
|
|
37 <option value="equCab1">equCab1</option>
|
|
|
38 <option value="equCab2">equCab2</option>
|
|
|
39 <option value="eriEur1">eriEur1</option>
|
|
|
40 <option value="eriEur2">eriEur2</option>
|
|
|
41 <option value="fr1">fr1</option>
|
|
|
42 <option value="fr2">fr2</option>
|
|
|
43 <option value="galVar1">galVar1</option>
|
|
|
44 <option value="gasAcu1">gasAcu1</option>
|
|
|
45 <option value="geoFor1">geoFor1</option>
|
|
|
46 <option value="gorGor3">gorGor3</option>
|
|
|
47 <option value="gorGor4">gorGor4</option>
|
|
|
48 <option value="gorGor5">gorGor5</option>
|
|
|
49 <option value="hetGla1">hetGla1</option>
|
|
|
50 <option value="hetGla2">hetGla2</option>
|
|
|
51 <option value="hg18">hg18</option>
|
|
|
52 <option value="hg19" selected="true">hg19</option>
|
|
|
53 <option value="hg38">hg38</option>
|
|
|
54 <option value="loxAfr3">loxAfr3</option>
|
|
|
55 <option value="macEug2">macEug2</option>
|
|
|
56 <option value="melGal1">melGal1</option>
|
|
|
57 <option value="melGal5">melGal5</option>
|
|
|
58 <option value="micMur2">micMur2</option>
|
|
|
59 <option value="mm10">mm10</option>
|
|
|
60 <option value="mm9">mm9</option>
|
|
|
61 <option value="monDom4">monDom4</option>
|
|
|
62 <option value="monDom5">monDom5</option>
|
|
|
63 <option value="myoLuc2">myoLuc2</option>
|
|
|
64 <option value="nanPar1">nanPar1</option>
|
|
|
65 <option value="nasLar1">nasLar1</option>
|
|
|
66 <option value="nomLeu1">nomLeu1</option>
|
|
|
67 <option value="nomLeu2">nomLeu2</option>
|
|
|
68 <option value="nomLeu3">nomLeu3</option>
|
|
|
69 <option value="ochPri3">ochPri3</option>
|
|
|
70 <option value="oreNil2">oreNil2</option>
|
|
|
71 <option value="ornAna1">ornAna1</option>
|
|
|
72 <option value="ornAna2">ornAna2</option>
|
|
|
73 <option value="oryCun2">oryCun2</option>
|
|
|
74 <option value="oryLat2">oryLat2</option>
|
|
|
75 <option value="oviAri1">oviAri1</option>
|
|
|
76 <option value="oviAri3">oviAri3</option>
|
|
|
77 <option value="papAnu2">papAnu2</option>
|
|
|
78 <option value="petMar1">petMar1</option>
|
|
|
79 <option value="petMar2">petMar2</option>
|
|
|
80 <option value="ponAbe2">ponAbe2</option>
|
|
|
81 <option value="priPac1">priPac1</option>
|
|
|
82 <option value="rheMac2">rheMac2</option>
|
|
|
83 <option value="rheMac3">rheMac3</option>
|
|
|
84 <option value="rheMac8">rheMac8</option>
|
|
|
85 <option value="rhiRox1">rhiRox1</option>
|
|
|
86 <option value="rn4">rn4</option>
|
|
|
87 <option value="rn5">rn5</option>
|
|
|
88 <option value="rn6">rn6</option>
|
|
|
89 <option value="sacCer1">sacCer1</option>
|
|
|
90 <option value="sacCer2">sacCer2</option>
|
|
|
91 <option value="sacCer3">sacCer3</option>
|
|
|
92 <option value="saiBol1">saiBol1</option>
|
|
|
93 <option value="sorAra2">sorAra2</option>
|
|
|
94 <option value="speTri2">speTri2</option>
|
|
|
95 <option value="strPur1">strPur1</option>
|
|
|
96 <option value="strPur2">strPur2</option>
|
|
|
97 <option value="susScr2">susScr2</option>
|
|
|
98 <option value="susScr3">susScr3</option>
|
|
|
99 <option value="taeGut1">taeGut1</option>
|
|
|
100 <option value="taeGut2">taeGut2</option>
|
|
|
101 <option value="tarSyr2">tarSyr2</option>
|
|
|
102 <option value="tetNig1">tetNig1</option>
|
|
|
103 <option value="tetNig2">tetNig2</option>
|
|
|
104 <option value="triMan1">triMan1</option>
|
|
|
105 <option value="xenTro3">xenTro3</option>
|
|
|
106 <option value="xenTro7">xenTro7</option>
|
|
|
107 </param>
|
|
|
108 </xml>
|
|
|
109
|
|
|
110 <xml name="citations">
|
|
|
111 <citations>
|
|
|
112 <citation type="doi">10.1093/bioinformatics/btz232</citation>
|
|
|
113 <yield />
|
|
|
114 </citations>
|
|
|
115 </xml>
|
|
|
116
|
|
|
117 </macros>
|
