Mercurial > repos > muon-spectroscopy-computational-project > larch_plot
annotate larch_plot.xml @ 3:5b993aff09e3 draft
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
| author | muon-spectroscopy-computational-project |
|---|---|
| date | Fri, 22 Mar 2024 14:23:33 +0000 |
| parents | 59d0d15a40ef |
| children | 35d24102cefd |
| rev | line source |
|---|---|
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
1 <tool id="larch_plot" name="Larch Plot" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05" license="MIT"> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
2 <description>plot Athena projects</description> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
3 <macros> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
4 <!-- version of underlying tool (PEP 440) --> |
|
2
59d0d15a40ef
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 0f66842e802430e887d1c6cb7be1cc5436408fd2
muon-spectroscopy-computational-project
parents:
1
diff
changeset
|
5 <token name="@TOOL_VERSION@">0.9.74</token> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
6 <!-- version of this tool wrapper (integer) --> |
|
3
5b993aff09e3
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
muon-spectroscopy-computational-project
parents:
2
diff
changeset
|
7 <token name="@WRAPPER_VERSION@">1</token> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
8 <!-- citation should be updated with every underlying tool version --> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
9 <!-- typical fields to update are version, month, year, and doi --> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
11 <import>macros.xml</import> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
12 </macros> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
13 <creator> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
14 <person givenName="Patrick" familyName="Austin" url="https://github.com/patrick-austin" identifier="https://orcid.org/0000-0002-6279-7823"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
15 </creator> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
16 <requirements> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
17 <requirement type="package" version="@TOOL_VERSION@">xraylarch</requirement> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
18 <requirement type="package" version="3.5.2">matplotlib</requirement> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
19 </requirements> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
20 <required_files> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
21 <include type="literal" path="larch_plot.py"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
22 <include type="literal" path="common.py"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
23 </required_files> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
24 <command detect_errors="exit_code"><![CDATA[ |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
25 mkdir plots |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
26 && python '${__tool_directory__}/larch_plot.py' '$dat_files' '$inputs' |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
27 ]]></command> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
28 <configfiles> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
29 <inputs name="inputs"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
30 </configfiles> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
31 <inputs> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
32 <param name="dat_files" type="data" format="prj" multiple="true" min="1" label="Athena projects" help="X-ray Absorption Spectroscopy (XAS) data, in Athena project format"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
33 <repeat name="plots" title="Plots" min="1" default="1" help="Each additional entry will create another output plot"> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
34 <conditional name="variable"> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
35 <param name="variable" type="select" display="radio" label="Variable" help="Variable to plot on the y axis"> |
|
3
5b993aff09e3
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
muon-spectroscopy-computational-project
parents:
2
diff
changeset
|
36 <option value="flat" selected="true">Flattened xμ</option> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
37 <option value="dmude">Derivative of xμ</option> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
38 <option value="chir_mag">Magnitude of χ(r)</option> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
39 </param> |
|
3
5b993aff09e3
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
muon-spectroscopy-computational-project
parents:
2
diff
changeset
|
40 <when value="flat"> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
41 <expand macro="plot_limits_energy"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
42 <param name="y_limit_min" type="float" label="Minimum xμ(E)" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
43 <param name="y_limit_max" type="float" label="Maximum xμ(E)" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
44 </when> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
45 <when value="dmude"> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
46 <expand macro="plot_limits_energy"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
47 <param name="y_limit_min" type="float" label="Minimum d(xμ(E))/dE" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
48 <param name="y_limit_max" type="float" label="Maximum d(xμ(E))/dE" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
49 </when> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
50 <when value="chir_mag"> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
51 <param name="x_limit_min" type="float" label="Minimum r (ang)" optional="true" help="If set, plot will be limited to this value on the x axis."/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
52 <param name="x_limit_max" type="float" label="Maximum r (ang)" optional="true" help="If set, plot will be limited to this value on the x axis."/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
53 <param name="y_limit_min" type="float" label="Minimum |χ(r)|" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
54 <param name="y_limit_max" type="float" label="Maximum |χ(r)|" optional="true" help="If set, plot will be limited to this value on the y axis."/> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
55 </when> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
56 </conditional> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
57 </repeat> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
58 </inputs> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
59 <outputs> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
60 <collection name="plot_collection" format="png" type="list"> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
61 <discover_datasets pattern="__name_and_ext__" directory="plots"/> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
62 </collection> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
63 </outputs> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
64 <tests> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
65 <!-- 1: plot types --> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
66 <test expect_num_outputs="1"> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
67 <param name="dat_files" value="test.prj"/> |
|
3
5b993aff09e3
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
muon-spectroscopy-computational-project
parents:
2
diff
changeset
|
68 <param name="variable" value="flat"/> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
69 <param name="variable" value="dmude"/> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
70 <param name="variable" value="chir_mag"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
71 <output_collection name="plot_collection" type="list" count="3"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
72 </test> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
73 <!-- 2: plot limits --> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
74 <test expect_num_outputs="1"> |
|
2
59d0d15a40ef
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 0f66842e802430e887d1c6cb7be1cc5436408fd2
muon-spectroscopy-computational-project
parents:
1
diff
changeset
|
75 <param name="dat_files" value="test.prj,merged.prj"/> |
|
3
5b993aff09e3
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit d4c7e090dc5c94395d7e1574845ac2c76f2e4f5f
muon-spectroscopy-computational-project
parents:
2
diff
changeset
|
76 <param name="variable" value="flat"/> |
|
1
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
77 <param name="x_limit_min" value="7000"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
78 <param name="x_limit_max" value="7200"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
79 <param name="y_limit_min" value="0"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
80 <param name="y_limit_max" value="1"/> |
|
002c18a3e642
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
muon-spectroscopy-computational-project
parents:
0
diff
changeset
|
81 <output_collection name="plot_collection" type="list" count="1"/> |
|
0
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
82 </test> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
83 </tests> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
84 <help><![CDATA[ |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
85 Using Larch, read Athena project files and plot data from them. |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
86 |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
87 Only Athena project files are accepted as input. If data is plaintext, |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
88 first load it using the Larch Athena tool. |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
89 All input files will appear on the same plot(s). |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
90 To generate multiple types of plot with the same set of files, |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
91 add additional sections to the form. |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
92 ]]></help> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
93 <citations> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
94 <citation type="doi">@TOOL_CITATION@</citation> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
95 <citation type="doi">10.1107/S0909049505012719</citation> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
96 </citations> |
|
886949a03377
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 5be486890442dedfb327289d597e1c8110240735
muon-spectroscopy-computational-project
parents:
diff
changeset
|
97 </tool> |