Mercurial > repos > mvdbeek > bam_readtagger

comparison findcluster.xml @ 8:bf8ffb337cbe draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1d14dc7cdb21c782dee08a1d5be1bd956d1a6dc8-dirty
author mvdbeek
date Sun, 05 Mar 2017 13:29:42 -0500
parents d2009cdcdeba
children 53b71263e2a2
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7:d2009cdcdeba 8:bf8ffb337cbe
1 <tool id="findcluster" name="Find clusters of reads" version="0.3.3"> 1 <tool id="findcluster" name="Find clusters of reads" version="0.3.4">
2 <description>in bam files</description> 2 <description>in bam files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.3.3">readtagger</requirement> 4 <requirement type="package" version="0.3.4">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>findcluster --version</version_command> 6 <version_command>findcluster --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 findcluster 8 findcluster
9 --input_path '$input' 9 --input_path '$input'
10 --output_bam '$output_bam' 10 --output_bam '$output_bam'
11 --output_gff '$output_gff' 11 --output_gff '$output_gff'
12 --sample_name '$input.element_identifier' 12 --sample_name '$input.element_identifier'
13 --threads "\${GALAXY_SLOTS:-2}"
13 ]]></command> 14 ]]></command>
14 <inputs> 15 <inputs>
15 <param name="input" argument="--input_path" type="data" format="bam"/> 16 <param name="input" argument="--input_path" type="data" format="bam"/>
16 </inputs> 17 </inputs>
17 <outputs> 18 <outputs>