Mercurial > repos > mvdbeek > bam_readtagger

diff findcluster.xml @ 8:bf8ffb337cbe draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 1d14dc7cdb21c782dee08a1d5be1bd956d1a6dc8-dirty
author mvdbeek
date Sun, 05 Mar 2017 13:29:42 -0500
parents d2009cdcdeba
children 53b71263e2a2
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--- a/findcluster.xml	Fri Mar 03 10:30:14 2017 -0500
+++ b/findcluster.xml	Sun Mar 05 13:29:42 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="findcluster" name="Find clusters of reads" version="0.3.3">
+<tool id="findcluster" name="Find clusters of reads" version="0.3.4">
     <description>in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.3">readtagger</requirement>
+        <requirement type="package" version="0.3.4">readtagger</requirement>
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
@@ -10,6 +10,7 @@
         --output_bam '$output_bam'
         --output_gff '$output_gff'
         --sample_name '$input.element_identifier'
+        --threads "\${GALAXY_SLOTS:-2}"
     ]]></command>
     <inputs>
         <param name="input" argument="--input_path" type="data" format="bam"/>