TEST	find_softclip	5p_clip	16727068	16727111	6	+	.	ID=softclip_test1;consensus=AAAAAA
X	feature	predicted_insertion	10766937	10766942	.	+	.	Parent=R37_49;contig_support=2;fraction_full_length=0.03132530120481928;sbjct=RR48388_transposable_element_rover_Gypsy;sbjct_end=7308;sbjct_start=7074;type=predicted_insertion
X	findcluster	transposable_element_rover	10766937	10766942	24	+	.	ID=R37_49;genotype=heterozygous;genotype_likelihoods=6.86863481923e-26,0.999999994797,5.2033283093e-09;insert_reference_name=transposable_element_rover;left_inserts=0,GGGGTGCATATATAGCGCACATATGTACATATTTGTACATATATAGTAACATAATATGCTTCTCATATTACGTTTACATACTTACACTAATTGTACATACAATCTTGCACATGCA,1,CAACAATGTATTATCCTACCGACTGCGCCACTTACGTATTTTACTATTCGAGTCGAACAAATGATCCGTCGTTTGACTAAGATCAACGCCTTTAAAGAAGTTTCAGAATCAACACGAGGTATTTTTTTAGTTTGGA;left_mate_count=4;max_mapq=60;nref=12;right_inserts=0,GGCGTTGATCTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAGTATATACATATGCATATGCAGTCCGAATCAAAATCGAAAACAAGAACTGCACTTTTCGCTGCGATTGGGGCACCTTCAGC,1,GTTTACATACTTACACTAATTGTACATACAATCTTGCACATGCATAAACACATCAAACCAGCTTACATTTTTACTTACACTTAAGCGCATGATTTGTTGTGCATCCATACCGTTATTTTTCCGTTCTTTTTTTGTACACATATACTGATTAGACATTCCCGTTTAT,2,CACATATACTGATTAGACATTCCCGTTTATCGCGACTCACTTCGAGCCGATCAAAAACTCTGTACAGTCAGTCTTAAGCCGACAACGAAGAAATAAAGATCCAAACTAAAAAAATACCTCGTGTTGATTCTGAAACTTCTTTAAAGGCGTTGATCTTAGTCAAACGACGGATCATTTGTT;right_mate_count=14;softclip_clusters=;total_left_count=6;total_right_count=18;valid_TSD=True
X	find_softclip	5p_clip	10766937	10766936	6	+	.	ID=softclip_0;consensus=GGCGTTGATCTTAGTCAAACGACGGATCATTTGTTCGACTCGAATAGTAAAATACGTAAG;max_mapq=60
X	find_softclip	3p_clip	10766943	10766942	3	+	.	ID=softclip_1;consensus=GTAACATAATATGCTTCTCATATTACGTTTACATACTTACACTAATTGTACATACAATCTTGCACATGCA;max_mapq=60
X	feature	left_insert	16726713	16727261	.	+	.	Parent=R37_26;fraction_full_length=0.003280519299225239;read_support=1;sbjct=FBti0059747_gtwin_Gypsy;sbjct_end=2536;sbjct_start=2489;type=left_insert
X	findcluster	gtwin	16726713	16727261	1	+	.	ID=R37_26;genotype=reference;genotype_likelihoods=1.0,1.93425522512e-14,6.88207144991e-72;insert_reference_name=gtwin;left_inserts=;left_mate_count=0;max_mapq=60;nref=47;right_inserts=;right_mate_count=1;softclip_clusters=;total_left_count=0;total_right_count=1;valid_TSD=False
X	feature	left_insert	16727068	16727111	.	+	.	Parent=R37_27;fraction_full_length=0.6875;read_support=1;sbjct=FBti0062261_jockey2_Jockey;sbjct_end=63;sbjct_start=19;type=left_insert
X	feature	right_insert	16727068	16727111	.	+	.	Parent=R37_27;fraction_full_length=0.0017704870646047116;read_support=1;sbjct=FBti0062666_HMS-Beagle_Gypsy;sbjct_end=10537;sbjct_start=10488;type=right_insert
X	findcluster	jockey2	16727068	16727111	6	+	.	ID=R37_27;genotype=heterozygous;genotype_likelihoods=8.55882087985e-05,0.999914411654,1.37666001367e-10;insert_reference_name=jockey2;left_inserts=;left_mate_count=0;max_mapq=25;nref=9;right_inserts=0,GATATGGACTTAATTGGAAATTAATTAATGCAATAATCCAATTAAGAATTTAATATTTAAAAAGGTGGACTGAATACTTAATACAAGAAGGATAATAGTACGCTAGTCAATTAAATAAAATAATTTCTTTAATAAAATTAAAGGAC;right_mate_count=2;softclip_clusters=softclip_2,softclip_3;total_left_count=3;total_right_count=4;valid_TSD=True
X	find_softclip	3p_clip	16727068	16727111	6	+	.	ID=softclip_2;consensus=TTTAATAAAATTAAAGGAC;max_mapq=34
X	find_softclip	5p_clip	16727068	16727111	5	+	.	ID=softclip_3;consensus=GAATTTAATATTTAAAAAGGTGGACTGAATACTTAATA;max_mapq=34
X	find_softclip	3p_clip	16727110	16727109	1	+	.	ID=softclip_4;consensus=CCTTTAATAAAATTAAAGGACAACTAAACGGAAGGAAAATATCGTGAGCAGAAAATAATATTAAGTCTTTAAAAG;max_mapq=34