Mercurial > repos > mvdbeek > bam_readtagger

changeset 1:f69131f584e8 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ca94ae0d3a25a511f7d2c98712efc37b332642e7-dirty
author mvdbeek
date Fri, 17 Feb 2017 12:25:01 -0500
parents a38447a59412
children 39d9bc17ec74
files allow_dovetailing.xml bam_readtagger.xml deploy.sh
diffstat 3 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/allow_dovetailing.xml	Fri Feb 17 10:54:47 2017 -0500
+++ b/allow_dovetailing.xml	Fri Feb 17 12:25:01 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.8">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.10">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.1.8">readtagger</requirement>
+        <requirement type="package" version="0.1.10">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
--- a/bam_readtagger.xml	Fri Feb 17 10:54:47 2017 -0500
+++ b/bam_readtagger.xml	Fri Feb 17 12:25:01 2017 -0500
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.1.8">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.1.10">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.1.8">readtagger</requirement>
+        <requirement type="package" version="0.1.10">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -a
--- a/deploy.sh	Fri Feb 17 10:54:47 2017 -0500
+++ b/deploy.sh	Fri Feb 17 12:25:01 2017 -0500
@@ -4,6 +4,9 @@
 
 CURRENT_DIR=$(dirname $0)
 
+echo "Installing planemo ... again"
+pip install planemo
+
 echo "Deploying to Testtoolshed ..."
 planemo shed_update -r --force_repository_creation -t testtoolshed --shed_key_from_env TTS_KEY "$CURRENT_DIR"