Mercurial > repos > mvdbeek > damidseq_findpeaks

diff log @ 5:29f82a5c7966 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author mvdbeek
date Fri, 20 Apr 2018 05:11:06 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/log	Fri Apr 20 05:11:06 2018 -0400
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+Simple FDR random permutation peak caller
+Usage: [options] [files in bedgraph or GFF format]
+	
+Options:
+ --fdr            False discovery rate value
+                    [Current value: 0.01]
+ --frac           Number of random fragments to consider per iteration
+ --min_count      Minimum number of fragments to consider as a peak
+                    [Current value: 2]
+ --min_quant      Minimum quantile for considering peaks
+                    [Current value: 0.95]
+ --n              Number of iterations
+                    [Current value: 100]
+ --step           Stepping for quantiles
+                    [Current value: 0.01]
+ --unified_peaks  Method for calling peak overlaps (two options):
+                    'min': call minimum overlapping peak area
+                    'max': call maximum overlap as peak
+                    [Current value: max]
+