Mercurial > repos > mvdbeek > damidseq_findpeaks
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author | mvdbeek |
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date | Fri, 20 Apr 2018 05:11:06 -0400 |
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Simple FDR random permutation peak caller Usage: [options] [files in bedgraph or GFF format] Options: --fdr False discovery rate value [Current value: 0.01] --frac Number of random fragments to consider per iteration --min_count Minimum number of fragments to consider as a peak [Current value: 2] --min_quant Minimum quantile for considering peaks [Current value: 0.95] --n Number of iterations [Current value: 100] --step Stepping for quantiles [Current value: 0.01] --unified_peaks Method for calling peak overlaps (two options): 'min': call minimum overlapping peak area 'max': call maximum overlap as peak [Current value: max]