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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit dded837d19aeb3f06b84e5076282cedeeaf713fa
author mvdbeek
date Sun, 22 Jul 2018 13:38:01 -0400
parents 21d312776891
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# Script runner base image
#
# VERSION       0.3
# This Dockerfile is the base system for executing scripts with the docker scriptrunner.

FROM artbio/scriptrunner

MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com

USER root
RUN su - galaxy -c 'bash -c ". /home/galaxy/conda/bin/activate default && \
    conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy r-reshape"' && \
    chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy