Mercurial > repos > mvdbeek > package_ascp_3
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ascp_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author | mvdbeek |
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date | Wed, 04 Nov 2015 06:07:29 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="ascp" version="3"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="darwin"> <!-- <action type="download_by_url">http://download.asperasoft.com/download/sw/connect/3.6.0/AsperaConnectInstaller-3.6.0.106805.dmg</action> --> <action type="download_by_url">https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/AsperaConnectInstaller-3.6.0.106805.dmg</action> <action type="shell_command">hdiutil attach -mountpoint install AsperaConnectInstaller-3.6.0.106805.dmg</action> <action type="shell_command">pkgutil --expand install/AsperaConnectInstaller.pkg extract</action> <action type="shell_command">cat extract/AsperaConnect.pkg/Payload | gzip -d - | cpio -id</action> <action type="shell_command">hdiutil detach install</action> <action type="move_directory_files"> <source_directory>Applications/Aspera Connect.app/Contents/Resources/</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> <actions architecture="x86_64" os="linux"> <!-- <action type="download_file">http://download.asperasoft.com/download/sw/ascp-client/3.5.4/ascp-install-3.5.4.102989-linux-64.sh</action> --> <action type="download_file">https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/ascp-install-3.5.4.102989-linux-64.sh</action> <action type="download_file">https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/asperaweb_id_dsa.openssh</action> <action type="move_file"> <source>asperaweb_id_dsa.openssh</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="shell_command"> sed -i.bak -e 's|if test `id -u` -ne 0; then echo You must be root; exit 1; fi||' ascp-install-3.5.4.102989-linux-64.sh sed -i.bak -e 's|/usr/local|$INSTALL_DIR|'g ascp-install-3.5.4.102989-linux-64.sh sed -i.bak -e 's|ln -sf $INSTALL_DIR/bin/ascp /usr/bin||' ascp-install-3.5.4.102989-linux-64.sh sh ascp-install-3.5.4.102989-linux-64.sh </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> </actions> </actions_group> </install> <readme> This tool dependency definition downloads and installs the aspera connect client, used for accelerating ncbi sra downloads. </readme> </package> </tool_dependency>