Mercurial > repos > mvdbeek > package_ngs_sdk_1_1_3

annotate tool_dependencies.xml @ 0:2cc3f1941cb5 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author mvdbeek
date Wed, 04 Nov 2015 06:10:25 -0500
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2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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1 <?xml version="1.0"?>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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2 <tool_dependency>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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3 <package name="perl" version="5.18.1">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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4 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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5 </package>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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6 <package name="ngs_sdk" version="1.1.3">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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7 <install version="1.0">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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8 <actions>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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9 <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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10 <action type="set_environment_for_install">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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11 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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12 <package name="perl" version="5.18.1" />
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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13 </repository>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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14 </action>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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15 <action type="change_directory">ngs-sdk</action>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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16 <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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17 <action type="set_environment">
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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19 <environment_variable action="set_to" name="NGS_SDK_DIR">$INSTALL_DIR</environment_variable>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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20 </action>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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21 </actions>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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22 </install>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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23 <readme>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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24 ncbi-ngs-sdk, required for sra-tools package.
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
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25
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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26 </readme>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
mvdbeek
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27 </package>
2cc3f1941cb5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
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28 </tool_dependency>