Mercurial > repos > mvdbeek > package_r_3_2_1_goseq_1_22_0

annotate tool_dependencies.xml @ 4:669c224f6525 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit 808b173b79976002d864d88077837871f88c5f2c-dirty
author mvdbeek
date Tue, 23 Feb 2016 13:48:02 -0500
parents a3af5af948c1
children 972abb2b8432
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388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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1 <?xml version="1.0"?>
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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2 <tool_dependency>
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3 <package name="R" version="3.2.1">
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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4 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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5 </package>
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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6 <package name="libxml2" version="2.9.1">
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7 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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8 </package>
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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9 <package name="goseq" version="1.22.0">
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10 <install version="1.0">
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11 <actions>
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12 <action type="setup_r_environment">
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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13 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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14 <package name="R" version="3.2.1" />
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15 </repository>
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16 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
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17 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
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18 <package name="libxml2" version="2.9.1" />
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19 </repository>
3
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20 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiasedUrn_1.07.tar.gz?raw=true</package>
a3af5af948c1 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit 808b173b79976002d864d88077837871f88c5f2c-dirty
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21 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiocGenerics_0.16.1.tar.gz?raw=true</package>
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22 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/S4Vectors_0.8.11.tar.gz?raw=true</package>
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23 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/IRanges_2.4.7.tar.gz?raw=true</package>
a3af5af948c1 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit 808b173b79976002d864d88077837871f88c5f2c-dirty
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24 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomeInfoDb_1.6.3.tar.gz?raw=true</package>
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25 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/zlibbioc_1.16.0.tar.gz?raw=true</package>
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26 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/XVector_0.10.0.tar.gz?raw=true</package>
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27 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomicRanges_1.22.4.tar.gz?raw=true</package>
a3af5af948c1 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit 808b173b79976002d864d88077837871f88c5f2c-dirty
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28 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/XML_3.98-1.3.tar.gz?raw=true</package>
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29 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Biostrings_2.38.4.tar.gz?raw=true</package>
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30 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/bitops_1.0-6.tar.gz?raw=true</package>
a3af5af948c1 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit 808b173b79976002d864d88077837871f88c5f2c-dirty
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31 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/RCurl_1.95-4.7.tar.gz?raw=true</package>
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32 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/lambda.r_1.1.7.tar.gz?raw=true</package>
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33 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/futile.options_1.0.0.tar.gz?raw=true</package>
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34 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/futile.logger_1.4.1.tar.gz?raw=true</package>
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35 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/snow_0.4-1.tar.gz?raw=true</package>
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36 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiocParallel_1.4.3.tar.gz?raw=true</package>
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37 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Rsamtools_1.22.0.tar.gz?raw=true</package>
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38 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Biobase_2.30.0.tar.gz?raw=true</package>
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39 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/SummarizedExperiment_1.0.2.tar.gz?raw=true</package>
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40 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomicAlignments_1.6.3.tar.gz?raw=true</package>
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41 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/rtracklayer_1.30.2.tar.gz?raw=true</package>
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42 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/DBI_0.3.1.tar.gz?raw=true</package>
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43 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/RSQLite_1.0.0.tar.gz?raw=true</package>
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44 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/AnnotationDbi_1.32.3.tar.gz?raw=true</package>
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45 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/biomaRt_2.26.1.tar.gz?raw=true</package>
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46 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomicFeatures_1.22.13.tar.gz?raw=true</package>
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47 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/geneLenDataBase_1.6.0.tar.gz?raw=true</package>
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48 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GO.db_3.2.2.tar.gz?raw=true</package>
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49 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/goseq_1.22.0.tar.gz?raw=true</package>
0
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50 </action>
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51 </actions>
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52 </install>
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53 <readme>
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54 goseq Gene Ontology analyser
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55 -----
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56 Does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data.
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57 By default, tests gene ontology (GO) categories, but any categories may be tested.
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58 </readme>
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59 </package>
388c91fb949b planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
mvdbeek
parents:
diff changeset
60 </tool_dependency>