Mercurial > repos > mvdbeek > package_sra_toolkit_2_5_2

comparison tool_dependencies.xml @ 1:c7f1e87de5b7 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_sra_toolkit_2_5_2 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author mvdbeek
date Wed, 04 Nov 2015 07:09:56 -0500
parents 88273fd00182
children
comparison
equal deleted inserted replaced
0:88273fd00182 1:c7f1e87de5b7
25 </repository> 25 </repository>
26 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="ngs_sdk" version="1.1.3" /> 27 <package name="ngs_sdk" version="1.1.3" />
28 </repository> 28 </repository>
29 </action> 29 </action>
30 <action type="shell"> 30 <action type="shell_command">
31 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build 31 ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build
32 </action> 32 </action>
33 <action type="shell_command">sed -i -e "109s/-static//" tools/copycat/Makefile</action> 33 <action type="shell_command">
34 <action type="make_install" /> 34 sed -i -e "109s/-static//" tools/copycat/Makefile ; make ; make install
35 </action>
35 <action type="set_environment"> 36 <action type="set_environment">
36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
37 </action> 38 </action>
38 </actions> 39 </actions>
39 </install> 40 </install>