Mercurial > repos > mvdbeek > package_sra_toolkit_2_5_2

changeset 1:c7f1e87de5b7 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_sra_toolkit_2_5_2 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author mvdbeek
date Wed, 04 Nov 2015 07:09:56 -0500
parents 88273fd00182
children
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Nov 04 06:51:59 2015 -0500
+++ b/tool_dependencies.xml	Wed Nov 04 07:09:56 2015 -0500
@@ -27,11 +27,12 @@
                         <package name="ngs_sdk" version="1.1.3" />
                     </repository>
                 </action>
-                <action type="shell">
+                <action type="shell_command">
                     ./configure --prefix=$INSTALL_DIR -with-ngs-sdk-prefix=$NGS_SDK_DIR --with-ncbi-vdb-sources=$NCBI_VDB_DIR --with-ncbi-vdb-build=$NCBI_VDB_DIR --build=$INSTALL_DIR/build
                 </action>
-                <action type="shell_command">sed -i -e "109s/-static//" tools/copycat/Makefile</action>
-                <action type="make_install" />
+                <action type="shell_command">
+                    sed -i -e "109s/-static//" tools/copycat/Makefile ; make ; make install
+                </action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                 </action>