annotate test_script_path.xml @ 1:a0cbbd0dfcc0 draft

Uploaded
author nanette
date Tue, 20 Aug 2013 08:36:34 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
1 <tool id="script_path" name="Test" version="1.0.0">
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
2 <description>script path</description>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
3 <requirements>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
4 <requirement type="set_environment">SCRIPT_PATH</requirement>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
5 </requirements>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
6 <command interpreter="python">
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
7 test_script_path.py --input1 $input1 --output1 $output1
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
8 </command>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
9 <inputs>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
10 <param label="Gene Universe file" name="input1" type="data" format="tabular" help="A tabular file with the full set of genes from the study (gene universe)"></param>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
11 </inputs>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
12 <outputs>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
13 <data format="tabular" name="output1" />
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
14 </outputs>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
15 <requirements>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
16 </requirements>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
17 <tests>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
18 <test>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
19 </test>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
20 </tests>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
21 <help>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
22
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
23 **What it does**
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
24
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
25 This tool uses the topGO R package to determine the enriched GO terms, for one or more gene lists simultaneously.
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
26
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
27 </help>
a0cbbd0dfcc0 Uploaded
nanette
parents:
diff changeset
28 </tool>