Mercurial > repos > nathandunn > biolinkplanteome
annotate test-data/genes-for-disease.json @ 0:028a3ffc17b4 draft
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
| author | nathandunn |
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| date | Fri, 23 Jun 2017 15:04:12 -0400 |
| parents | |
| children | 66ece4fd024f |
| rev | line source |
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028a3ffc17b4
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
nathandunn
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changeset
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1 {"associations": [{"subject_extension": null, "slim": null, "publications": null, "object": {"xrefs": null, "taxon": {"label": null, "id": null}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "Parkinson Disease 4, Autosomal Dominant", "deprecated": null, "id": "OMIM:605543", "description": null, "consider": null}, "id": "d5e54aab-71b0-4786-b9b9-043eb5ce3a3f", "type": null, "evidence_graph": {"nodes": [{"lbl": "some variant of SNCA that causes Parkinson disease 4", "id": ":.well-known/genid/OMIM163890-605543VL"}, {"lbl": "SNCA, TRIPLICATION", "id": "ClinVarVariant:14009"}, {"lbl": "SNCA", "id": "NCBIGene:6622"}, {"lbl": null, "id": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea"}, {"lbl": "some variant of K04528 alpha-synuclein | (RefSeq) SNCA", "id": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL"}, {"lbl": "some variant of SNCA that is marker/mechanism for Parkinson Disease 4, Autosomal Dominant Lewy Body", "id": ":.well-known/genid/NCBIGene6622-OMIM605543VL"}, {"lbl": null, "id": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344"}, {"lbl": "Parkinson Disease 4, Autosomal Dominant", "id": "OMIM:605543"}, {"lbl": "sequencing assay evidence", "id": "ECO:0000220"}, {"lbl": null, "id": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7"}], "edges": [{"sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": "ClinVarVariant:14009", "pred": "GENO:0000840", "obj": "OMIM:605543"}, {"sub": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": ":.well-known/genid/OMIM163890-605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": "ClinVarVariant:14009", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/NCBIGene6622-OMIM605543VL"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "RO:0002558", "obj": "ECO:0000220"}, {"sub": ":.well-known/genid/OMIM163890-605543VL", "pred": "RO:0002200", "obj": "OMIM:605543"}, {"sub": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/OMIM163890-605543VL"}, {"sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "pred": "RO:0002607", "obj": "OMIM:605543"}, {"sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "pred": "RO:0002607", "obj": "OMIM:605543"}]}, "subject": {"xrefs": null, "taxon": {"label": "Homo sapiens", "id": "NCBITaxon:9606"}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "SNCA", "deprecated": null, "id": "NCBIGene:6622", "description": null, "consider": null}, "provided_by": ["https://data.monarchinitiative.org/ttl/kegg.ttl", "https://data.monarchinitiative.org/ttl/ctd.ttl", "https://data.monarchinitiative.org/ttl/omim.ttl", "http://data.monarchinitiative.org/ttl/clinvar.ttl"], "relation": {"types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": null, "deprecated": null, "id": null, "description": null, "consider": null}, "qualifiers": null, "object_extension": null, "evidence_types": null}], "compact_associations": null, "objects": ["NCBIGene:6622"], "start": null, "numFound": null, "facet_pivot": null, "facet_counts": {"subject_taxon_label": {"Homo sapiens": 1}, "object_closure": {"DOID:14330": 1, "BFO:0000020": 1, "MESH:D009422": 1, "DOID:0050890": 1, "DOID:863": 1, "BFO:0000002": 1, "MESH:D001927": 1, "DOID:0060895": 1, "DOID:480": 1, "BFO:0000016": 1, "DOID:0060892": 1, "MESH:D004194": 1, "DOID:4": 1, "DOID:679": 1, "MESH:D019636": 1, "DOID:7": 1, "MESH:D001480": 1, "MESH:D002493": 1, "BFO:0000001": 1, "DOID:1289": 1, "BFO:0000017": 1, "DOID:936": 1, "MESH:D009069": 1, "MESH:D010300": 1, "DOID:331": 1}}} |