Mercurial > repos > nathandunn > biolinkplanteome
diff variant-associations.xml @ 1:66ece4fd024f draft default tip
planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
| author | nathandunn |
|---|---|
| date | Wed, 28 Jun 2017 10:27:08 -0400 |
| parents | 028a3ffc17b4 |
| children |
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--- a/variant-associations.xml Fri Jun 23 15:04:12 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,38 +0,0 @@ -<tool id="planteome-variant-associations" name="Variant Associations" version="0.1.0"> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="frontmatter" /> - <command><![CDATA[ -curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/variant/$input/$association/?rows=$rows&fetch_objects=true' > $output - ]]></command> - <inputs> - <param name="input" type="text" format="txt" multiple="false" label="Variant (e.g. ZFIN:ZDB-ALT-010427-8, ClinVarVariant:39783)" /> - <param name="association" type="select" multiple="false" display="radio" label="Type"> - <option value="genes">Genes</option> - <option value="genotypes">Genotypes</option> - <option value="phenotypes">Phenotypes</option> - </param> - <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> - </inputs> - <expand macro="outputs" /> - <tests> - <test> - <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> - <param name="association" value="genes"/> - <output name="output" file="genes-for-variant.json"/> - </test> - <test> - <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> - <param name="association" value="genotypes"/> - <output name="output" file="genotypes-for-variant.json"/> - </test> - <test> - <param name="input" value="ClinVarVariant:65929"/> - <param name="association" value="phenotypes"/> - <output name="output" file="phenotypes-for-variant.json"/> - </test> - </tests> - <expand macro="citations" /> -</tool> -