Mercurial > repos > nick > allele_counts

annotate tests/artificial-nofilt.csv.out @ 5:31361191d2d2

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC.
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
2 THYROID chr1 0 30 0 0 0 30 1 A . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
3 THYROID chr1 10 30 0 2 0 32 2 A G 0.0625
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
4 THYROID chr1 20 31 0 1 0 32 0 A G 0.03125
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
5 THYROID chr1 30 21 0 4 0 25 2 A G 0.16
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
6 THYROID chr1 40 22 0 3 0 25 0 A G 0.12
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
7 THYROID chr1 50 3 0 0 0 3 1 A . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
8 THYROID chr1 60 2 0 2 0 4 2 A G 0.5
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
9 THYROID chr1 70 1 0 3 0 4 0 G A 0.25
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
10 THYROID chr1 80 104 0 3 0 107 0 A G 0.02804
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
11 THYROID chr1 90 100 2 11 0 113 3 A G 0.09735
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
12 THYROID chr1 100 100 1 11 0 112 0 A G 0.09821
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
13 THYROID chr1 120 0 0 0 0 0 0 . . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
14 THYROID chr1 130 0 0 2 0 2 1 G . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
15 THYROID chr1 140 0 0 1 0 1 0 G . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
16 THYROID chr1 150 0 0 4 0 4 1 G . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
17 THYROID chr1 160 0 0 3 0 3 0 G . 0.0
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
18 THYROID chr1 260 106 0 14 0 120 2 A G 0.11667
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
19 THYROID chr1 300 2 0 2 76 80 3 T G 0.025
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
20 THYROID chr1 310 12 0 12 76 100 3 T G 0.12
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
21 THYROID chr1 320 12 0 12 56 80 3 T A 0.15
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
22 THYROID chr1 330 7 0 7 66 80 3 T G 0.0875
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
23 THYROID chr1 340 1 0 1 98 100 0 T G 0.01
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
24 THYROID chr1 350 11 0 11 78 100 0 T A 0.11
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
25 THYROID chr1 400 32 0 8 0 40 2 A G 0.2
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
26 THYROID chr1 410 1 0 2 97 100 0 T G 0.02
31361191d2d2 Uploaded tarball.
nick
parents:
diff changeset
27 THYROID chr1 420 104 0 0 0 104 1 A . 0.0