annotate tests/real-mit-s.csv.out @ 5:31361191d2d2
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Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
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Thu, 12 Sep 2013 11:34:23 -0400 |
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411adeff1eec |
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1 #SAMPLE CHR POS +A +C +G +T -A -C -G -T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC.
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2 S1 chrM 2000 1 9095 1 0 7 5808 0 1 14913 1 C A 0.00054
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3 S3 chrM 2000 0 7933 0 4 10 5242 1 2 13192 1 C A 0.00076
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4 S1 chrM 3000 17399 7 22 8 10567 35 22 4 28064 0 A G 0.00157
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5 S2 chrM 3000 12535 3 24 2 7937 13 12 2 20528 1 A G 0.00175
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6 S3 chrM 3000 18981 7 29 6 11286 33 17 4 30363 0 A G 0.00152
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7 S4 chrM 3000 9254 1 15 2 6240 16 14 1 15543 0 A G 0.00187
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8 S1 chrM 4000 6134 2 1 3 6124 1 1 1 12267 1 A T 0.00033
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9 S1 chrM 7000 0 17 1 6216 4 9 2 7529 13778 0 T C 0.00189
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10 S2 chrM 7000 0 7 2 5104 0 9 4 6288 11414 1 T C 0.0014
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11 S3 chrM 7000 0 9 0 6446 4 4 10 7506 13979 1 T C 0.00093
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12 S3 chrM 8000 3 1 5023 1 1 0 5043 2 10074 1 G A 0.0004
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