Mercurial > repos > nick > allele_counts

annotate tests/real-mit.csv.out @ 8:411adeff1eec draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Handle "." sample columns, update tests to work with BIAS column.
author nick
date Tue, 23 Aug 2016 02:30:56 -0400
parents 31361191d2d2
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MAF BIAS
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
2 S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054 2.03879
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
3 S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076 2.51047
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
4 S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157 0.51868
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
5 S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175 0.22864
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
6 S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152 0.01416
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
7 S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187 0.33202
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
8 S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033 0.99804
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
9 S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189 0.81221
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
10 S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014 0.04254
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
11 S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093 0.92561
411adeff1eec Handle "." sample columns, update tests to work with BIAS column.
nick
parents: 5
diff changeset
12 S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004 1.00358