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view tool_dependencies.xml @ 5:000969829a5d draft

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correct.py wrapper fix
author nick
date Fri, 27 Oct 2017 12:50:39 -0400
parents 5fbeaa41b223
children 23f5d9316694
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line source

<?xml version="1.0"?>
<tool_dependency>
  <package name="bowtie2" version="2.2.5">
    <repository changeset_revision="30bd7eaeddbf" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="samtools" version="0.1.18">
    <repository changeset_revision="1409782220c9" name="package_samtools_0_1_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="mafft" version="7.221">
    <repository changeset_revision="15974dd17515" name="mafft" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="networkx" version="1.11">
    <repository changeset_revision="e761775277c1" name="package_networkx_1_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="dunovo" version="2.0.6">
    <install version="1.0">
      <actions>
        <action sha256sum="3d628d297767f9836ab57ef738b2b29f588c36df8c43ec6814ea97e29da1d5ec" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.6.tar.gz</action>
        <action type="shell_command">make</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
        <!-- Note: This does not install the submodules.
        Functionality they provide will not be available. -->
      </actions>
    </install>
  </package>
</tool_dependency>