--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 23 22:06:21 2015 -0500
@@ -0,0 +1,22 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="mafft" version="7.221">
+    <repository changeset_revision="d71e007323d4" name="mafft" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
+  </package>
+  <package name="duplex" version="0.1">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">https://github.com/makrutenko/duplex/archive/master.tar.gz</action>
+        <action type="shell_command">make</action>
+        <action type="move_directory_files">
+          <source_directory>.</source_directory>
+          <destination_directory>$INSTALL_DIR</destination_directory>
+        </action>
+        <action type="set_environment">
+          <environment_variable action="set_to" name="DUPLEX_DIR">$INSTALL_DIR</environment_variable>
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>