Mercurial > repos > nick > duplex

changeset 1:b63d6673f883 draft

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Bump version number and install from a stable, tagged Github release.
author nick
date Mon, 23 Nov 2015 22:53:35 -0500
parents d2e46adc199e
children ba2a53b970ca
files align_families.xml duplex.xml make_families.xml tool_dependencies.xml
diffstat 4 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/align_families.xml	Mon Nov 23 22:06:21 2015 -0500
+++ b/align_families.xml	Mon Nov 23 22:53:35 2015 -0500
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
-<tool id="align_families" name="Align families" version="0.1">
+<tool id="align_families" name="Align families" version="0.2">
   <description>from duplex sequencing data</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
-    <requirement type="package" version="0.1">duplex</requirement>
+    <requirement type="package" version="0.2">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
   <command detect_errors="exit_code">python \$DUPLEX_DIR/align_families.py $input &gt; $output
--- a/duplex.xml	Mon Nov 23 22:06:21 2015 -0500
+++ b/duplex.xml	Mon Nov 23 22:53:35 2015 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="duplex" name="Make consensus reads" version="0.1">
+<tool id="duplex" name="Make consensus reads" version="0.2">
   <description>from duplex sequencing data</description>
   <requirements>
-    <requirement type="package" version="0.1">duplex</requirement>
+    <requirement type="package" version="0.2">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
--- a/make_families.xml	Mon Nov 23 22:06:21 2015 -0500
+++ b/make_families.xml	Mon Nov 23 22:53:35 2015 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="make_families" name="Make families" version="0.1">
+<tool id="make_families" name="Make families" version="0.2">
   <description>from duplex sequencing data</description>
   <requirements>
-    <requirement type="package" version="0.1">duplex</requirement>
+    <requirement type="package" version="0.2">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
   <command>paste $fastq1 $fastq2
--- a/tool_dependencies.xml	Mon Nov 23 22:06:21 2015 -0500
+++ b/tool_dependencies.xml	Mon Nov 23 22:53:35 2015 -0500
@@ -3,10 +3,10 @@
   <package name="mafft" version="7.221">
     <repository changeset_revision="d71e007323d4" name="mafft" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
   </package>
-  <package name="duplex" version="0.1">
+  <package name="duplex" version="0.2">
     <install version="1.0">
       <actions>
-        <action type="download_by_url">https://github.com/makrutenko/duplex/archive/master.tar.gz</action>
+        <action type="download_by_url">https://github.com/makrutenko/duplex/archive/v0.2.tar.gz</action>
         <action type="shell_command">make</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>