Mercurial > repos > nick > duplex

changeset 2:ba2a53b970ca draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 670b3282d2c120882b956ad617e61369467fb0fe
author nick
date Tue, 24 Nov 2015 21:22:29 -0500
parents b63d6673f883
children aedbdf8ce1af
files align_families.xml duplex.xml make_families.xml
diffstat 3 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/align_families.xml	Mon Nov 23 22:53:35 2015 -0500
+++ b/align_families.xml	Tue Nov 24 21:22:29 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
-<tool id="align_families" name="Align families" version="0.2">
-  <description>from duplex sequencing data</description>
+<tool id="align_families" name="Du Novo: Align families" version="0.2">
+  <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
     <requirement type="package" version="0.2">duplex</requirement>
--- a/duplex.xml	Mon Nov 23 22:53:35 2015 -0500
+++ b/duplex.xml	Tue Nov 24 21:22:29 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
-<tool id="duplex" name="Make consensus reads" version="0.2">
-  <description>from duplex sequencing data</description>
+<tool id="duplex" name="Du Novo: Make consensus reads" version="0.2">
+  <description>from duplex sequencing alignments</description>
   <requirements>
     <requirement type="package" version="0.2">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
--- a/make_families.xml	Mon Nov 23 22:53:35 2015 -0500
+++ b/make_families.xml	Tue Nov 24 21:22:29 2015 -0500
@@ -1,10 +1,11 @@
 <?xml version="1.0"?>
-<tool id="make_families" name="Make families" version="0.2">
-  <description>from duplex sequencing data</description>
+<tool id="make_families" name="Du Novo: Make families" version="0.2">
+  <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="0.2">duplex</requirement>
     <requirement type="set_environment">DUPLEX_DIR</requirement>
   </requirements>
+  <!-- TODO: Add dependency on coreutils to get paste? -->
   <command>paste $fastq1 $fastq2
     | paste - - - -
     | awk -f \$DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant