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annotate beagle_phase.sh @ 20:f9a3d6a36ca5 draft

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author nicolas
date Fri, 21 Oct 2016 06:31:27 -0400
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children 10afd4b2847b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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20
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1 #!/bin/bash
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2
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3
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4 vcf_input=$1
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5 out="out_phased"
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6
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7 directory=`dirname $0`
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8
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9 mkdir tmpdir$$
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10
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11 cp -rf $vcf_input tmpdir$$/input.vcf
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12
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13
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14 java -jar $directory/beagle.jar gt=$vcf_input out=$out
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15
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16
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17 rm -rf tmpdir$$