Mercurial > repos > nicolas > oghma
comparison rrBLUP.xml @ 15:9178c17023aa draft
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| author | nicolas |
|---|---|
| date | Fri, 21 Oct 2016 06:29:45 -0400 |
| parents | |
| children | e80b87a35c61 |
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| 14:4d21b6806e19 | 15:9178c17023aa |
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| 1 <tool id="rrBLUP" name="rrBLUP" version="1.0.0"> | |
| 2 <description>predict phenotype using a rrBLUP approach</description> | |
| 3 <command interpreter="Rscript"> | |
| 4 rrBLUP.R $config > ${output1} | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="genotype" type="data" | |
| 9 label="genotype data" help="a tabular datatype containing the encoded genotypes" | |
| 10 /> | |
| 11 | |
| 12 <param name="phenotype" type="data" | |
| 13 label="phenotype data" help=" a tabular datatype containing the phenotypes " | |
| 14 /> | |
| 15 | |
| 16 <param name="model" type="text" | |
| 17 label="path to the output folds" help= " a path to a file where the results (depending on the chosen mode) will be writen" | |
| 18 /> | |
| 19 </inputs> | |
| 20 | |
| 21 <configfiles> | |
| 22 <configfile name="config"> | |
| 23 ## Desc: this file is sourced in encode wrapper script | |
| 24 ## as means to pass all galaxy params to R | |
| 25 "${genotype}" -> genotype | |
| 26 "${phenotype}" -> phenotype | |
| 27 "${model}" -> out | |
| 28 | |
| 29 </configfile> | |
| 30 </configfiles> | |
| 31 | |
| 32 <outputs> | |
| 33 <data format="tabular" name = "output1" label="rrBLUP output" /> | |
| 34 </outputs> | |
| 35 | |
| 36 <help> | |
| 37 make the classification using the rrBLUP method | |
| 38 </help> | |
| 39 </tool> |