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1 <tool id="rrBLUP" name="rrBLUP" version="1.0.0">
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2 <description>predict phenotype using a rrBLUP approach</description>
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3 <command interpreter="Rscript">
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4 rrBLUP.R $config > ${output1}
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5 </command>
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6
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7 <inputs>
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8 <param name="genotype" type="data"
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9 label="genotype data" help="a tabular datatype containing the encoded genotypes"
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10 />
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11
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12 <param name="phenotype" type="data"
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13 label="phenotype data" help=" a tabular datatype containing the phenotypes "
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14 />
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15
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16 <param name="model" type="text"
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17 label="path to the output folds" help= " a path to a file where the results (depending on the chosen mode) will be writen"
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18 />
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19 </inputs>
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20
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21 <configfiles>
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22 <configfile name="config">
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23 ## Desc: this file is sourced in encode wrapper script
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24 ## as means to pass all galaxy params to R
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25 "${genotype}" -> genotype
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26 "${phenotype}" -> phenotype
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27 "${model}" -> out
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28
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29 </configfile>
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30 </configfiles>
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31
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32 <outputs>
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33 <data format="tabular" name = "output1" label="rrBLUP output" />
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34 </outputs>
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35
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36 <help>
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37 make the classification using the rrBLUP method
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38 </help>
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39 </tool> |
