<tool id="Beagle_phase" name="Beagle_phase" >
	<description> beagle as a phasing tools</description>
	<command interpreter="bash">beagle_phase.sh $vcf_input </command>
	<inputs>
		<param format="vcf" name="vcf_input" type="data" label="VCF file to phase"/>
	</inputs>
	<outputs>
		<data format="vcf" name="vcf_ouput" label="Phased VCF" from_work_dir="out_phased.vcf.gz"/>
		<data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/>
	</outputs>
	
	</tool>