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changeset 21:1efd84f03444 draft

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Uploaded
author nicolas
date Fri, 21 Oct 2016 06:31:43 -0400
parents f9a3d6a36ca5
children f0d89ff35ad2
files beagle_phase.xml
diffstat 1 files changed, 12 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/beagle_phase.xml	Fri Oct 21 06:31:43 2016 -0400
@@ -0,0 +1,12 @@
+<tool id="Beagle_phase" name="Beagle_phase" >
+	<description> beagle as a phasing tools</description>
+	<command interpreter="bash">beagle_phase.sh $vcf_input </command>
+	<inputs>
+		<param format="vcf" name="vcf_input" type="data" label="VCF file to phase"/>
+	</inputs>
+	<outputs>
+		<data format="vcf" name="vcf_ouput" label="Phased VCF" from_work_dir="out_phased.vcf.gz"/>
+		<data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/>
+	</outputs>
+	
+	</tool>
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