Mercurial > repos > nicolas > oghma
changeset 78:5a56e1e3b235 draft
Uploaded
| author | nicolas |
|---|---|
| date | Fri, 28 Oct 2016 08:46:32 -0400 |
| parents | d388ee8c2d87 |
| children | 14b976f46889 |
| files | folds.xml |
| diffstat | 1 files changed, 41 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/folds.xml Fri Oct 28 08:46:32 2016 -0400 @@ -0,0 +1,41 @@ +<tool id="folds" name="folds" version="1.0.0"> + <description>create folds for classifiers evaluation through cross-validation</description> + <command interpreter="Rscript"> + folds.R $config > ${output1} + </command> + + <inputs> + <param name="genotype" type="data" + label="encoded data" help="encoded must be a .rds file" + /> + + <param name="n" type="integer" value ="7" + label="number of folds" help=" must be an integer. You may want its value be at least 5" + /> + + <!-- <param name="foldsFile" type="text" + label="path to the output file" help= " a valid path is expected " + /> --> + </inputs> + + <configfiles> + <configfile name="config"> +## Desc: this file is sourced in encode wrapper script +## as means to pass all galaxy params to R +"${genotype}" -> genotype +"${n}" -> n +"${output1}" -> out + + </configfile> +</configfiles> + +<outputs> + <data format="tabular" name = "output1" label="folds" /> +</outputs> + + <help> + Takes the genotypes and use it to determine the different folds for further cross-valisations + return a rda file that contains a list of indexes of the genotype, each element of the list is a fold + the list is made to be used by other tools of the OGHMA suite. + </help> + </tool> \ No newline at end of file