Mercurial > repos > nikhil-joshi > mirdeep2_and_targetspy

diff mirdeep2/bowtie_build.xml @ 0:5b9519f4b165

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Upload first commmit
author nikhil-joshi
date Mon, 19 Sep 2011 19:04:41 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mirdeep2/bowtie_build.xml	Mon Sep 19 19:04:41 2011 -0400
@@ -0,0 +1,22 @@
+<tool id="bowtiebuild" name="Bowtie Indexing">
+	<description>Build index for Bowtie alignment</description>
+
+	<requirements>
+                <requirement type="perl-module">bowtie_build_wrapper.pl</requirement>
+        </requirements>
+
+        <command interpreter="perl">
+		./bowtie_build_wrapper.pl $fastafile "$output.files_path" $output "$fastafile.name"
+	</command>
+
+	<inputs>
+		<param format="fasta" name="fastafile" type="data" optional="false" label="Fasta reference file" help="Reference file in fasta format"/>
+	</inputs>
+
+	<outputs>
+		<data format="bowtie_html_index" name="output"/>
+	</outputs>
+
+	<help>
+	</help>
+</tool>