Mercurial > repos > nikhil-joshi > mirdeep2_and_targetspy

view mirdeep2/target_spy.xml @ 1:798fe7ba8b5e default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
uploading ucsc browser species file
author nikhil-joshi
date Mon, 19 Sep 2011 19:07:09 -0400
parents 5b9519f4b165
children
line wrap: on
line source

<tool id="target_spy" name="Target Spy">
	<description>Find targets for miRNAs</description>

	<requirements>
                <requirement type="perl-module">target_spy_wrapper.pl</requirement>
        </requirements>

        <command interpreter="perl">
		./target_spy_wrapper.pl $mirna_file $trans_file $targets
	</command>

	<inputs>
		<param format="fasta" name="mirna_file" type="data" optional="false" label="miRNA file in Fasta format" />
		<param format="fasta" name="trans_file" type="data" optional="false" label="3' UTR transcript file in Fasta format" />
	</inputs>

	<outputs>
		<data format="txt" name="targets"/>
	</outputs>

	<help>
	</help>
</tool>