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view mirdeep2/target_spy.xml @ 0:5b9519f4b165

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author nikhil-joshi
date Mon, 19 Sep 2011 19:04:41 -0400
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<tool id="target_spy" name="Target Spy">
	<description>Find targets for miRNAs</description>

	<requirements>
                <requirement type="perl-module">target_spy_wrapper.pl</requirement>
        </requirements>

        <command interpreter="perl">
		./target_spy_wrapper.pl $mirna_file $trans_file $targets
	</command>

	<inputs>
		<param format="fasta" name="mirna_file" type="data" optional="false" label="miRNA file in Fasta format" />
		<param format="fasta" name="trans_file" type="data" optional="false" label="3' UTR transcript file in Fasta format" />
	</inputs>

	<outputs>
		<data format="txt" name="targets"/>
	</outputs>

	<help>
	</help>
</tool>