Mercurial > repos > nikhil-joshi > mirdeep2_and_targetspy

diff mirdeep2/target_spy.xml @ 0:5b9519f4b165

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author nikhil-joshi
date Mon, 19 Sep 2011 19:04:41 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mirdeep2/target_spy.xml	Mon Sep 19 19:04:41 2011 -0400
@@ -0,0 +1,23 @@
+<tool id="target_spy" name="Target Spy">
+	<description>Find targets for miRNAs</description>
+
+	<requirements>
+                <requirement type="perl-module">target_spy_wrapper.pl</requirement>
+        </requirements>
+
+        <command interpreter="perl">
+		./target_spy_wrapper.pl $mirna_file $trans_file $targets
+	</command>
+
+	<inputs>
+		<param format="fasta" name="mirna_file" type="data" optional="false" label="miRNA file in Fasta format" />
+		<param format="fasta" name="trans_file" type="data" optional="false" label="3' UTR transcript file in Fasta format" />
+	</inputs>
+
+	<outputs>
+		<data format="txt" name="targets"/>
+	</outputs>
+
+	<help>
+	</help>
+</tool>