Mercurial > repos > nikos > bigwig_to_wig
comparison bigwig_to_wig.xml @ 2:bce77c02cc5f draft
Fixed tool dependency errors
| author | nikos |
|---|---|
| date | Tue, 05 Aug 2014 09:03:05 -0400 |
| parents | 561c9a746a81 |
| children |
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| 1:561c9a746a81 | 2:bce77c02cc5f |
|---|---|
| 1 <tool id="bigwig_to_wig" name="BigWig to Wig" version="1.0.2"> | 1 <tool id="bigwig_to_wig" name="BigWig to Wig" version="1.0.2"> |
| 2 <description>converter</description> | 2 <description>converter</description> |
| 3 <command>bigwig_to_wig.sh -f $input -b $bin_size -l $mylab > $output </command> | 3 <command interpreter="bash">bigwig_to_wig.sh -f $input -b $bin_size -l $mylab > $output </command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package">bigWigSummary</requirement> | 5 <requirement type="package" version="1.0">bigWigSummary</requirement> |
| 6 <requirement type="package">bigWigInfo</requirement> | 6 <requirement type="package" version="1.0">bigWigInfo</requirement> |
| 7 </requirements> | 7 </requirements> |
| 8 <inputs> | 8 <inputs> |
| 9 <param format="bigwig" name="input" type="data" label="BigWig file to convert" /> | 9 <param format="bigwig" name="input" type="data" label="BigWig file to convert" /> |
| 10 <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Must be an even integer > 100." /> | 10 <param name="bin_size" size="4" type="integer" value="500" label="Bin size" help="Must be an even integer > 100." /> |
| 11 <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" /> | 11 <param name="mylab" type="text" value="wiggle_file" label="Output file prefix" help="" /> |