Mercurial > repos > nilesh > cmpfastq

annotate cmpfastq.xml @ 1:54ab39950f59 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
first commit
author nilesh
date Fri, 12 Jul 2013 14:36:19 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
54ab39950f59 first commit
nilesh
parents:
diff changeset
1 <tool id="cmpfastq" name="Compare two fast files">
54ab39950f59 first commit
nilesh
parents:
diff changeset
2 <description>Comparing two fastq files</description>
54ab39950f59 first commit
nilesh
parents:
diff changeset
3 <requirements>
54ab39950f59 first commit
nilesh
parents:
diff changeset
4 <requirement type="set_environment">CFQ_SCRIPT_PATH</requirement>
54ab39950f59 first commit
nilesh
parents:
diff changeset
5 </requirements>
54ab39950f59 first commit
nilesh
parents:
diff changeset
6 <command>\$CFQ_SCRIPT_PATH/cmpfastq $input1 $input2 $output1 $output2 $output3 $output4</command>
54ab39950f59 first commit
nilesh
parents:
diff changeset
7 <inputs>
54ab39950f59 first commit
nilesh
parents:
diff changeset
8 <param name="input1" type="data" format="fastq" label="Source file 1"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
9 <param name="input2" type="data" format="fastq" label="Source file 2"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
10 <!--<param name="input3" type="select" label="Option">
54ab39950f59 first commit
nilesh
parents:
diff changeset
11 <option value="d">d</option>
54ab39950f59 first commit
nilesh
parents:
diff changeset
12 <option value="h ">h</option>
54ab39950f59 first commit
nilesh
parents:
diff changeset
13 </param> -->
54ab39950f59 first commit
nilesh
parents:
diff changeset
14 </inputs>
54ab39950f59 first commit
nilesh
parents:
diff changeset
15 <outputs>
54ab39950f59 first commit
nilesh
parents:
diff changeset
16 <data format="txt" name="output1" label="Common file 1"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
17 <data format="txt" name="output2" label="Common file 2"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
18 <data format="txt" name="output3" label="Unique file 1"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
19 <data format="txt" name="output4" label="Unique file 2"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
20 </outputs>
54ab39950f59 first commit
nilesh
parents:
diff changeset
21
54ab39950f59 first commit
nilesh
parents:
diff changeset
22 <tests>
54ab39950f59 first commit
nilesh
parents:
diff changeset
23 <test>
54ab39950f59 first commit
nilesh
parents:
diff changeset
24 <!-- <param name="input" value="fa_gc_content_input.fa"/>
54ab39950f59 first commit
nilesh
parents:
diff changeset
25 <output name="out_file1" file="fa_gc_content_output.txt"/> -->
54ab39950f59 first commit
nilesh
parents:
diff changeset
26 </test>
54ab39950f59 first commit
nilesh
parents:
diff changeset
27 </tests>
54ab39950f59 first commit
nilesh
parents:
diff changeset
28
54ab39950f59 first commit
nilesh
parents:
diff changeset
29 <help>
54ab39950f59 first commit
nilesh
parents:
diff changeset
30 This tool computes GC content from a FASTA file.
54ab39950f59 first commit
nilesh
parents:
diff changeset
31 </help>
54ab39950f59 first commit
nilesh
parents:
diff changeset
32
54ab39950f59 first commit
nilesh
parents:
diff changeset
33 </tool>