Mercurial > repos > nilesh > fastq_validator

comparison tool_dependencies.xml @ 30:5cdeeb572e5b draft

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author nilesh
date Thu, 27 Jun 2013 11:13:11 -0400
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29:556ca790e027 30:5cdeeb572e5b
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="libStatGen" version="1.0.0">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone https://github.com/statgen/libStatGen.git</action>
7 <action type="shell command">git reset --hard c73a8cde531c624bfd335d2f5cc5067444e0b3dd</action>
8 <action type="shell command">sudo apt-get install g++ libssl-dev zlib1g-dev</action>
9 <action type="shell command">make</action>
10 <action type="set_environment">
11 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
12 </action>
13 </actions>
14 </install>
15 <readme>
16 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
17 </readme>
18 <repository changeset_revision="556ca790e027" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
19 </package>
20 <!-- <package name="fastq_validator" version="1.0.0">
21 <install version="1.0">
22 <actions>
23 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
24 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
25 <action type="shell command">make all</action>
26 <action type="set_environment">
27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
28 </action>
29 </actions>
30 </install>
31 <readme>
32 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
33 </readme>
34 <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
35 </package> -->
36 </tool_dependency>