Mercurial > repos > nilesh > fastq_validator

changeset 30:5cdeeb572e5b draft

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Uploaded
author nilesh
date Thu, 27 Jun 2013 11:13:11 -0400
parents 556ca790e027
children 1849c4284f72
files tool_dependencies.xml
diffstat 1 files changed, 36 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jun 27 11:13:11 2013 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libStatGen" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone https://github.com/statgen/libStatGen.git</action>
+                <action type="shell command">git reset --hard c73a8cde531c624bfd335d2f5cc5067444e0b3dd</action>
+                <action type="shell command">sudo apt-get install g++ libssl-dev zlib1g-dev</action>
+                <action type="shell command">make</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
+        </readme>
+        <repository changeset_revision="556ca790e027" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <!-- <package name="fastq_validator" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell command">make all</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
+        </readme>
+        <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package> -->
+</tool_dependency>