annotate README.txt @ 36:cd98580c35e3

Removed non-ascii unicode from README.txt, caused issues with toolshed rendering
author lparsons
date Tue, 22 Jul 2014 16:55:54 -0400
parents ff21a055413b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
35
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
1 == RSeQC Galaxy Wrapper ==
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
2
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
3 This is a Galaxy wrapper for the RSeQC RNA-Seq QC package.
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
4
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
5 ** Installation **
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
6
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
7 Installation from a tool shed provides the necessary tool dependencies, R, numpy, and RSeQC.
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
8
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
9 Otherwise, make sure that R and the RSeQC scripts are in the path and run under the Galaxy environment.
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
10 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
11 Restart the Galaxy server.
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
12
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
13 Requires Python 2.7
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
14
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
15 ** Attribution **
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
16
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
17 The RSeQC package and associated documentation can be found at: http://rseqc.sourceforge.net/
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
18
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
19 The galaxy wrapper code was written by
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
20 Nilesh Kavthekar, School of Engineering and Applied Sciences, University of Pennsylvania, Class of 2016
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
21 Modified by
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
22 Lance Parsons, Lewis-Sigler Institute for Integrative Genomics, Princeton University,
36
cd98580c35e3 Removed non-ascii unicode from README.txt, caused issues with toolshed rendering
lparsons
parents: 35
diff changeset
23 Bjorn Gruning, University of Freiburg, bjoern.gruening@gmail.com
35
ff21a055413b Create lib directories during install, added README.txt
lparsons
parents:
diff changeset
24 The development of the wrapper code is housed on BitBucket at: https://bitbucket.org/lance_parsons/rseqc_galaxy_wrapper