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comparison tin.xml @ 54:5873cd7afb67 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 62a9135bf04aec398d3172d17ccd60f5242d8e82
author iuc
date Wed, 13 Jun 2018 18:02:25 -0400
parents 09846d5169fa
children f437057e46f1
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53:080fd5739bb4 54:5873cd7afb67
1 <tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@"> 1 <tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@.1">
2 <description> 2 <description>
3 evaluates RNA integrity at a transcript level 3 evaluates RNA integrity at a transcript level
4 </description> 4 </description>
5 5
6 <macros> 6 <macros>
48 <!-- PDF Files contain R version, must avoid checking for diff --> 48 <!-- PDF Files contain R version, must avoid checking for diff -->
49 <tests> 49 <tests>
50 <test> 50 <test>
51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/> 51 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/> 52 <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/>
53 <output name="outputsummary" file="output.tin.summary.txt"/> 53 <output name="outputsummary">
54 <assert_contents>
55 <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" />
56 <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" />
57 </assert_contents>
58 </output>
54 <output name="outputxls" file="output.tin.xls"/> 59 <output name="outputxls" file="output.tin.xls"/>
55 </test> 60 </test>
56 </tests> 61 </tests>
57 62
58 <help><![CDATA[ 63 <help><![CDATA[