Mercurial > repos > nilesh > rseqc

diff tin.xml @ 54:5873cd7afb67 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 62a9135bf04aec398d3172d17ccd60f5242d8e82
author iuc
date Wed, 13 Jun 2018 18:02:25 -0400
parents 09846d5169fa
children f437057e46f1
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--- a/tin.xml	Tue Mar 20 05:37:48 2018 -0400
+++ b/tin.xml	Wed Jun 13 18:02:25 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@">
+<tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@.1">
     <description>
         evaluates RNA integrity at a transcript level
     </description>
@@ -50,7 +50,12 @@
         <test>
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
             <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/>
-            <output name="outputsummary" file="output.tin.summary.txt"/>
+            <output name="outputsummary">
+                <assert_contents>
+                    <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" />
+                    <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" />
+                </assert_contents>
+            </output>
             <output name="outputxls" file="output.tin.xls"/>
         </test>
     </tests>