Mercurial > repos > nilesh > rseqc

comparison test-data/output.junctionSaturation_plot.r @ 49:6b33e31bda10 draft

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Uploaded tar based on https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc 1a3c419bc0ded7c40cb2bc3e7c87bfb01ddfeba2
author lparsons
date Thu, 16 Jul 2015 17:43:43 -0400
parents
children 09846d5169fa
comparison
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48:2e6190c29c54 49:6b33e31bda10
1 pdf('output.junctionSaturation_plot.pdf')
2 x=c(5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100)
3 y=c(0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1)
4 z=c(0,0,0,0,0,0,1,1,1,1,1,1,1,2,2,2,2,2,2,3)
5 w=c(0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,2)
6 m=max(0,0,0)
7 n=min(0,0,0)
8 plot(x,z/1000,xlab='percent of total reads',ylab='Number of splicing junctions (x1000)',type='o',col='blue',ylim=c(n,m))
9 points(x,y/1000,type='o',col='red')
10 points(x,w/1000,type='o',col='green')
11 legend(5,0, legend=c("All junctions","known junctions", "novel junctions"),col=c("blue","red","green"),lwd=1,pch=1)
12 dev.off()