Mercurial > repos > nilesh > rseqc

diff RPKM_saturation.xml @ 59:dbedfc5f5a3c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 5873cd7afb67
children 1421603cc95b
line wrap: on
line diff
--- a/RPKM_saturation.xml	Thu Nov 28 15:56:37 2019 -0500
+++ b/RPKM_saturation.xml	Sat Dec 18 19:41:19 2021 +0000
@@ -1,6 +1,6 @@
-<tool id="rseqc_RPKM_saturation" name="RPKM Saturation" version="@WRAPPER_VERSION@.1">
+<tool id="rseqc_RPKM_saturation" name="RPKM Saturation" version="@TOOL_VERSION@.2">
     <description>calculates raw count and RPKM values for transcript at exon, intron, and mRNA level</description>
-
+    <expand macro="bio_tools"/>
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
@@ -33,8 +33,8 @@
         #end if
 
         -l ${percentileFloor} -u ${percentileCeiling} -s ${percentileStep} -c ${rpkmCutoff}
-        ]]>
-    </command>
+        --mapq $mapq
+    ]]></command>
 
     <inputs>
         <expand macro="bam_param" />