Mercurial > repos > nilesh > rseqc
changeset 33:073c77ce5e94
export PYTHONPATH during install, note python 2.7 requirement
| author | lparsons |
|---|---|
| date | Tue, 15 Oct 2013 12:58:55 -0400 |
| parents | 580ee0c4bc4e |
| children | 8fbd165f8835 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Oct 07 15:01:13 2013 -0400 +++ b/tool_dependencies.xml Tue Oct 15 12:58:55 2013 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="R" version="3.0.1"> - <repository changeset_revision="7473992d1f38" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="numpy" version="1.7.1"> <repository changeset_revision="028df1ddd7a2" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> @@ -10,7 +10,7 @@ <install version="1.0"> <actions> <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.3.7.tar.gz</action> - <action type="shell_command">python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> <action type="set_environment"> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> @@ -19,7 +19,7 @@ </install> <readme> RSeQC version 2.3.7, documentation available at http://dldcc-web.brc.bcm.edu/lilab/liguow/CGI/rseqc/_build/html/index.html. - Requires gcc and python. + Requires gcc and python 2.7. </readme> </package>